CDS

Accession Number TCMCG017C15909
gbkey CDS
Protein Id OMO92056.1
Location join(51182..51226,51566..51645,51916..52015,52144..52251,52499..52615,52808..52958,53704..53951,54124..54312,55431..55504,55593..55710,56176..56259,56727..56816,56957..57058,57152..57220,57733..57828,57898..58005,58241..58354,58513..58596,59428..59556,60208..60406,60510..60653,60757..60800,61020..61103,61187..61255,61361..61437,62348..62417,62583..62732,62902..62967,63162..63306,63434..63498,63608..63673,64378..64471,64846..64882,64972..65029,65197..65307,65637..65704,66187..66253,66339..66407,66869..66913)
GeneID InterPro:IPR003392
Organism Corchorus olitorius
locus_tag COLO4_17925

Protein

Length 1277aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01016398.1
Definition Patched [Corchorus olitorius]
Locus_tag COLO4_17925

EGGNOG-MAPPER Annotation

COG_category I
Description Niemann-Pick C1
KEGG_TC 2.A.6.6
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko02000        [VIEW IN KEGG]
KEGG_ko ko:K12385        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04142        [VIEW IN KEGG]
ko04979        [VIEW IN KEGG]
map04142        [VIEW IN KEGG]
map04979        [VIEW IN KEGG]
GOs GO:0000323        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005496        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005576        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005764        [VIEW IN EMBL-EBI]
GO:0005773        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0005887        [VIEW IN EMBL-EBI]
GO:0006082        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006486        [VIEW IN EMBL-EBI]
GO:0006629        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006869        [VIEW IN EMBL-EBI]
GO:0007034        [VIEW IN EMBL-EBI]
GO:0007041        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008202        [VIEW IN EMBL-EBI]
GO:0008206        [VIEW IN EMBL-EBI]
GO:0008289        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009100        [VIEW IN EMBL-EBI]
GO:0009101        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010876        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015485        [VIEW IN EMBL-EBI]
GO:0015850        [VIEW IN EMBL-EBI]
GO:0015918        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016021        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019752        [VIEW IN EMBL-EBI]
GO:0030301        [VIEW IN EMBL-EBI]
GO:0031224        [VIEW IN EMBL-EBI]
GO:0031226        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0032787        [VIEW IN EMBL-EBI]
GO:0032934        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0036094        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042592        [VIEW IN EMBL-EBI]
GO:0042632        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043178        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043413        [VIEW IN EMBL-EBI]
GO:0043436        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044281        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044459        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0048471        [VIEW IN EMBL-EBI]
GO:0048878        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0055088        [VIEW IN EMBL-EBI]
GO:0055092        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070085        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901135        [VIEW IN EMBL-EBI]
GO:1901137        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901615        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCTTAGTTTGGTTGCAGAACTCGTTGCTAGTTTTACTGTTAATGTGCTTTTATTAACGCCAGTATTATGGGCAGAGAAGACTGATTCCACTGGCCTTCCGGTTTCTTCTTATCTAACTTCAGGGGAAAGGCATTCTAAAGAATATTGTGCAATGTATGATATATGCGGACAACGCAGTGATGGGAAAGTTCTCAATTGCCCTTATGGTTCTCCTTCTGTGAAGCCTGATGAGCTATTTTCTGCCAAAATTCAAAGCTTGTGCCCATCAATAAGTGGTAATGTTTGTTGCACGGAGGATCAATTTGACACATTGCGAGCACAGGTTCAACAGGCAATTCCTATCCTAGTTGGTTGTCCAGCATGCTTGAGAAACTTCTTAAATCTTTTCTGTGAGCTGTCATGCTCTCCAAATCAAAGTCTTTTCATCAATGTAACTTCTGTTGCAGAGGTTAATGGCAACTTGACAGTCGATGGCATTGACTATTACGTATCTGATGCTTTTGGGGAAGGGCTTTTTGATTCCTGTAAGGAGGTAAAATTTGGGACCATGAATACACGGGCCATTGAATTCGTAGGTGCTGGGGCAACAAACTTTAAAGAGTGGTTTGATTTTATTGGTCAGAAAGCTCTGCCTGGGTTTCCTGGTTCACCTTATACCATTGATTTCAAGTCTAGTGTTACTAACTCCTCTGGGATGGAGCTAATGGATGTTTCTACTTATTCATGTGGCGACACCTCTCTGGGCTGCTCTTGTGGTGATTGCCCTTCATCACCTCAATGCTCCAGTTCTGAACCTCCTTCACCACCAAAAAAAGATGACTGCTCAATTAGTATTGGGCCTGTAAAGGTAAAATGTATCGAATTTGCATTAGCTATTGCATACATTATATTGGTCTTTGGACTTGTTGGATGGGCATTTTTCTACTGGCCAAGAGAAAGGAGAGCTGCATCTGACAGGGAACCTTTGCTTAAGTCCATGGATGAAAATGAAGCGAATTCTGCTAGCATGCAAAATGTTGAGGACCTTGCTCTGAAGGGACAGGTGGCTCCGCAATTGACAAATGGGGCTCAACTTTCCTATATTCAAGGATACATGTCAAGCTTTTACAGGAGTTATGGAACATGGGTTGCTAGAAATCCTACTCTTGTACTGTGTTCATCGTTGGCAGTTGTTATTGTACTTTGTTTTGGTCTCATTCGTTTTGAAGTGGAGACACGGCCAGAGAAGTTGTGGGTAGGCCATGGGAGTAGGGCAGCAGAGGAGAAACAGTTTTTTGACAGTCACCTTGCGCCCTTCTACAGAATTGAACAGCTTATAATAGCTACTTTGCCTGAGCATGGGAAACGACCAAGTATAGTGACAGAGGAAAACATCCAATTGCTTTTTGAAATTCAAGAGAAGGTTGATGGAATTCATGCAAATTATTCTGGTTCAGTTGTGTCTCTGACTGACATTTGCTTAAAGCCTCTTGACCAAGATTGTGCTACTCAGAGCGTTCTACAGTATTTCAAGATGAACTGGGAAAACTTTGACTACTATGGAGGAGTTGAACATGCTGAGTACTGTTTTCAGCATTACACTTCAGCAGACACATGTTTGAGCGCATTTCAGGCTCCACTTGATCCTAGCACATCATTAGGGGGATTTTCTGGGAACAATTATTCTGAGGCTTCTGCATTTGTTGTGACCTACCCAGTTAACAATGCAATTGACGAAGCAGGCAATGGGAATGGGAAGGCGGTGGCTTGGGAAAAAGCTTTTATTCAGTTACTGAAGGAGGAGCTTCTACCTATGGTTGAGTCTAGAAATCTTACTCTTTCATTTTCATCTGAAAGCTCAATTGAGGAAGAACTGAAAAGAGAGAGCACTGCAGATGTTATAACAATTGTTGTAAGTTATCTTGTAATGTTTGCTTACATATCTGTTACATTGGGAGATGCACCCCGACTATCTACCTTCTATATCTCATCCAAGGTTCTGCTTGGTCTTTCAGGAGTTATTCTTGTCATGCTCTCTGTTCTCGGATCTGTTGGGGTTTTCAGTGCTTTTGGAGTTAAATCTACATTGATCATAATGGAAGTGATTCCTTTCCTAGTTTTGGCTGTTGGAGTTGATAACATGTGTATACTGGTTCATGCTGTAAAACGGCAACCATTGGACTTACCTTTAGAGGAACGAATCAGTAATGCACTGGTTGAAGTTGGTCCATCCATAACGCTAGCTAGTTTGTCTGAGATCCTTGCATTTGCAGTTGGAGGTTTCATACCTATGCCAGCATGCCGTGTCTTTTCCCTGTTTGCAGCTTTGGCTGTTCTACTGGACTTCCTCCTACAAGTTACTGCTTTTGTTTCACTGATAGTTTTCGACTGTCTTAGAGCTGAGGATAACAGGGTTGACTGTTTTCCATGCATAAAAATTCCTTCATCTGCTGGAGAGTCTGATGAAGGTCGGAACTCAAGAGGACCTGGACTTTTGGCTAGATATATGCAAGAAATCCATGCACCCATTCTCAGTCTTTGGGGAGTTAAGCTGGTTGTAGTTGCCGTCTTTATTGCTTTTGCTTTGGCAAGCATTGCCCTTTCCACAAGAATTGAGTCTGGTTTGGAGCAACAAATTGTTCTTCCTCGGGACTCATATCTTCAGGGGTACTTTACCGATCTCGCAGAATTTCTCAGAATTGGACCACCATTGTATTTTGTTGTTAAGGACTACAACTACAGCTCCGAATCAAGACATACAAACAAGTTATGCTCCATTAACCAGTGTGATTCTAACTCTCTTTTGAATGAGATATCAAGTGCCTCATCAGCTCCAGAATCAAGCTACATTGCTAAGCCAGCTGCCTCATGGCTTGATGATTTTCTTGTATGGTTATCACCAGAGGCATTTGGTTGCTGCCGGAAGTTTACAAATGGCTCTTACTGTCCACCAGATGATCAACCACCTTGCTGTTCATCTGATGGAGGTTCTTGCGGCTTAGGTGGAGTCTGCAAAGACTGTACTACATGCTTCCGCCACGCAGATTTGATTAATGATCGCCCATCTACAGAGCAATTTAGAGAGAAGCTCCCGTGGTTCCTTGATGCTCTGCCATCTGCTGATTGTGCCAAAGGTGGTCATGGGGCTTATACCACCAGTGTGGATTTGAATGGTTATGAGAGTGGCGTAATACAAGCGTCAGAGTTCCGTACCTATCACACACCACTTAACAGACAAGGTGACTATGTTAATGCACTACGAGCTGCACGGGATTTCAGCTCAAGAGTTTCCGATTCATTGAAGATGGATATCTTTCCTTATTCGGTATTTTATATTTTCTTCGAGCAATATCTTGATATTTGGCAGATAGCTTTGATGAATATCGCTATAGCACTAGGTGCTATTTTTGTTGTTTGTCTGGTTATCACATCCAGTTTGTGGATTTCTGCCATCCTTCTACTGGTACTGGTGATGATTGTTGTAGATCTCATGGGTGTAATGGCAATTCTGGATATTCAGCTGAATGCAGTCTCCGTTGTGAACCTTGTAATGTCATTAGGGATTGCTGTTGAATTTTGTGTGCATATAGCTAACGCTTTCTTGGTCAGCAATGGGGATAGGGATCAAAGAATGAAGGAGGCTCTCGGTACCATTGGAGCATCTGTATTCAGTGGAATCACACTCACGAAGCTTGTAGGAGTAGTTGTGCTTTTCTTCTCAAGAACAGAACTCTTTGTGGTTTACTACTTTCAGATGTACTTGGCATTGGTTCTTGTCGGTTTCTTACACGGGCTTGTGTTTTTACCTGTGGTGCTGAGTATGTTTGGTCCACCGGCAAGAATTGTTACTTAA
Protein:  
MLSLVAELVASFTVNVLLLTPVLWAEKTDSTGLPVSSYLTSGERHSKEYCAMYDICGQRSDGKVLNCPYGSPSVKPDELFSAKIQSLCPSISGNVCCTEDQFDTLRAQVQQAIPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSVAEVNGNLTVDGIDYYVSDAFGEGLFDSCKEVKFGTMNTRAIEFVGAGATNFKEWFDFIGQKALPGFPGSPYTIDFKSSVTNSSGMELMDVSTYSCGDTSLGCSCGDCPSSPQCSSSEPPSPPKKDDCSISIGPVKVKCIEFALAIAYIILVFGLVGWAFFYWPRERRAASDREPLLKSMDENEANSASMQNVEDLALKGQVAPQLTNGAQLSYIQGYMSSFYRSYGTWVARNPTLVLCSSLAVVIVLCFGLIRFEVETRPEKLWVGHGSRAAEEKQFFDSHLAPFYRIEQLIIATLPEHGKRPSIVTEENIQLLFEIQEKVDGIHANYSGSVVSLTDICLKPLDQDCATQSVLQYFKMNWENFDYYGGVEHAEYCFQHYTSADTCLSAFQAPLDPSTSLGGFSGNNYSEASAFVVTYPVNNAIDEAGNGNGKAVAWEKAFIQLLKEELLPMVESRNLTLSFSSESSIEEELKRESTADVITIVVSYLVMFAYISVTLGDAPRLSTFYISSKVLLGLSGVILVMLSVLGSVGVFSAFGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPLDLPLEERISNALVEVGPSITLASLSEILAFAVGGFIPMPACRVFSLFAALAVLLDFLLQVTAFVSLIVFDCLRAEDNRVDCFPCIKIPSSAGESDEGRNSRGPGLLARYMQEIHAPILSLWGVKLVVVAVFIAFALASIALSTRIESGLEQQIVLPRDSYLQGYFTDLAEFLRIGPPLYFVVKDYNYSSESRHTNKLCSINQCDSNSLLNEISSASSAPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFTNGSYCPPDDQPPCCSSDGGSCGLGGVCKDCTTCFRHADLINDRPSTEQFREKLPWFLDALPSADCAKGGHGAYTTSVDLNGYESGVIQASEFRTYHTPLNRQGDYVNALRAARDFSSRVSDSLKMDIFPYSVFYIFFEQYLDIWQIALMNIAIALGAIFVVCLVITSSLWISAILLLVLVMIVVDLMGVMAILDIQLNAVSVVNLVMSLGIAVEFCVHIANAFLVSNGDRDQRMKEALGTIGASVFSGITLTKLVGVVVLFFSRTELFVVYYFQMYLALVLVGFLHGLVFLPVVLSMFGPPARIVT